Post Digestion Bead Clean and Plate Read

Plate C Post Digest Clean and Plate Read

Date Performed: April 27th, 2021

Followed Step 7 From DDRad protocol for post digestion 1.8X bead clean on plate C
https://docs.google.com/document/d/1iWBGgBZuXlVuiEV-A3ecxeyn9ZaY389tAqGZWksjs5Y/edit

Followed Protocol for Plate Reader:
https://docs.google.com/document/d/1iWBGgBZuXlVuiEV-A3ecxeyn9ZaY389tAqGZWksjs5Y/edit

For Plate C made the following master mix:\

  • 37 samples plus 12 standards
  • 10mL buffer
  • 100ul dye
  • 100ul enhancer

(200ul buffer per sample + 2ul dye per sample + 2ul enhancer per sample plus error, also include each standard you’re going to do here as a sample)

Standard Setup

  • 2 0ng/ul
  • 2 2ng/ul
  • 2 12ng/ul
  • 2 25ng/ul
  • 1 50ng/ul
  • 1 100ng/ul

Plate Read Result: Infographic of plate read

Layout Same as Plate Setup
Infographic of plate C setup

Plate Reader said no DNA present in Plate C, ran a few samples on Qubit to confirm
Samples 887, 760, 422, 769, 403 from plate B for comparison

Sample Run 1
S1 179.22
S2 23037.59
756 OUT OF RANGE TOO LOW
845 OUT OF RANGE TOO LOW
404 OUT OF RANGE TOO LOW
488 OUT OF RANGE TOO LOW
833 OUT OF RANGE TOO LOW
877 5.64
760 4.40
422 OUT OF RANGE TOO LOW
769 OUT OF RANGE TOO LOW
403 3.86
Written on April 27, 2021