Horseshoe Crab DNA Quantification
Horseshoe Crab DNA Quantification - Qubit Assay Broad Range dsDNA
Date Performed: September 11th, 2020
Tissue samples quantified: 441, 442, 443, 444-2, 446, 859
Quantification Set-up for Quibit
- Retrieved samples for quantification from -20 freezer and placed in ice bucket
- Retrieved standards for quantification from 4 degree refrigerator to come to room temp
- Retrieved Quant-IT Reagent and Quibit Buffer from Puritz bench
- Calculated master-mix formula
- n = number of samples + number of standards(2) + 1 (for error)
- master mix = n ul of reagent + 199*n ul of buffer
- Mixed master mix components in 5mL tube
- Vortexed tube then spun in large centrifuge
- Set up thin walled Axygen tubes for each sample and standards
- Added 190ul of master mix to tubes for standards
- Added 199ul of master mix to tubes for Samples
- Vortexed standards and added 10ul of each to corresponding Axygen tube
- Vortexed and spun down samples
- Carefully added 1ul of each sample to corresponding Axygen tube. Made sure to watch 1ul come out of pipette to ensure it did not stick to the side/not come out
- Vortexed and spun all Axygen tubes at Qubit station before reading
Reading Samples
- Woke up Quibit and selected Broad Range DNA assay
- Read standards to ensure 10 fold difference between first and second standard
- Read each sample twice
Sample | Run 1 | Run 2 |
---|---|---|
S1 | 155 | |
S2 | 16844 | |
441 | 10.3 | 9.72 |
442 | 12.0 | 11.5 |
443 | 13.6 | 13.1 |
444-2 | 8.74 | 8.4 |
446 | 11.0 | 10.7 |
859 | 14.3 | 14.0 |
Written on September 11, 2020