Horseshoe Crab DNA Quantification
Horseshoe Crab DNA Quantification - Qubit Assay Broad Range dsDNA
Date Performed: September 2nd, 2020
Tissue samples quantified: 425, 444, 445, 491, 818, 824, 887
Quantification Set-up for Quibit
- Retrieved samples for quantification from -20 freezer and placed in ice bucket
- Retrieved standards for quantification from 4 degree refrigerator to come to room temp
- Retrieved Quant-IT Reagent and Quibit Buffer from Puritz bench
- Calculated master-mix formula
- n = number of samples + number of standards(2) + 1 (for error)
- master mix = n ul of reagent + 199*n ul of buffer
- Mixed master mix components in 5mL tube
- Vortexed tube then spun in large centrifuge
- Set up thin walled Axygen tubes for each sample and standards
- Added 190ul of master mix to tubes for standards
- Added 199ul of master mix to tubes for Samples
- Vortexed standards and added 10ul of each to corresponding Axygen tube
- Vortexed and spun down samples
- Carefully added 1ul of each sample to corresponding Axygen tube. Made sure to watch 1ul come out of pipette to ensure it did not stick to the side/not come out
- Vortexed and spun all Axygen tubes at Qubit station before reading
Reading Samples
- Woke up Quibit and selected Broad Range DNA assay
- Read standards to ensure 10 fold difference between first and second standard
- Read each sample twice
Sample | Run 1 | Run 2 |
---|---|---|
S1 | 138.92 | |
S2 | 14728.31 | |
425 | 7.8 | 7.22 |
444 | 9.44 | 9.12 |
445 | 6.16 | 5.74 |
491 | 5.82 | 5.76 |
818 | 10.1 | 9.9 |
824 | 8.5 | 8.26 |
887 | 26.4 | 25.8 |
Written on September 2, 2020